[ help ]

Lipid-converter assumes that any file it receives is properly formatted, and has a consequtive residue numbering. The first residues does not need to be number one, but the program parses the uploaded file and assumes the number of residues is equal to the last residue number - the first residue number.


[ transformations ]

In transformation mode, the following combinations are available:

Forcefield 1 Forcefield 2 Lipids in input file
Berger CHARMM36 POPC,POPE,POPG,POPS,DMPC,DOPC,DPPC
Gromos43A1-S3 ... POPC,DMPC,DOPC,DPPC,DLPC
Gromos53A6 ... POPC,POPG,DMPC,DPPC
Gromos54A7 ... POPC,POPS,DMPC,DOPC,DPPC
Berger Gromos43A1-S3 POPC,DMPC,DOPC,DPPC


[ conversions ]

In conversion mode, the following combinations are available:

Forcefield Input lipid Output lipid
CHARMM36 POPC POPE,POPG,POPS,DOPC,DMPC,DPPC
... POPE POPC,POPG,POPS,DOPC,DMPC,DPPC
... POPG POPC,POPE,POPS,DOPC,DMPC,DPPC
... POPS POPC,POPE
Gromos43A1-S3 POPC POPE,DOPC,DMPC,DPPC,DLPC
... POPE POPC,DOPC,DMPC,DPPC,DLPC
... DMPC POPC,POPE,DOPC,DPPC,DLPC
... DOPC POPC,POPE,DMPC,DPPC,DLPC
... DPPC POPC,POPE,DMPC,DOPC,DLPC
... DLPC POPC,POPE,DMPC,DPPC,DOPC

If something isn't working as expected, please either download the python source code and try that, or send a mail to pl6n__{at}__virginia.edu, and we will try to help out